PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_833C847B7.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 571aa    MW: 66980.8 Da    PI: 7.524
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_833C847B7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.31.4e-2421114291
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 
                            fYn+YA e GFsvrks+ +    n+ i+ r+ vCs++g+ree++ k   ++++rr+r+ tr+gC+akl++++++ +g+w v+++  eH
  Traes_6BS_833C847B7.1  21 FYNKYALEKGFSVRKSYVEWDGSNKYIILRNIVCSCQGFREEKHMKrkmEDRKRRPRSLTRVGCNAKLVITRQEeTGRWFVKDFIDEH 108
                            9*****************************************999988889999*******************99************* PP

                   FAR1  86 nHelap 91 
                            +H+lap
  Traes_6BS_833C847B7.1 109 SHPLAP 114
                            ***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-2221114IPR004330FAR1 DNA binding domain
PfamPF105512.1E-33235329IPR018289MULE transposase domain
PROSITE profilePS509669.854513552IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MFEYLNVISK MFDSEAEGYG FYNKYALEKG FSVRKSYVEW DGSNKYIILR NIVCSCQGFR  60
EEKHMKRKME DRKRRPRSLT RVGCNAKLVI TRQEETGRWF VKDFIDEHSH PLAPRDISCL  120
LRSHRRISDE QKADIADMEK CGICKYHIMD ILCFQYGGFD KVGCIKRDIY NFCHANKQET  180
ISVGDANTVI MHMMARRERD VDFFFKYLVD EHGHLKGLFW ADSQSRLDYE AFRDVIVFDS  240
TYRTNKYNLP FVPFVRLNHH RNTLIFGCGI ISHETSQAYE WMLRTFSDCM AQKHPISVII  300
DGDLAMQRAI RVVWPDSNHR LCIWHIQQNI VRHLHDDDVK EEFKSFIYDT SSIEEHEIKW  360
IRFLQQNKVT SEESWLHQMY HMRKLWCAPY LEGRCFLGLS SNQRSESLNS VLHTHLEGKM  420
SLFEMLEHYE RCLASRQINE ALHDVEALQS VPFTEENASP LEKHAATVFT PSVFKMVLWS  480
IDAVSKCQIR EILDGSEDST YVVSKQERMD KKFGVCVEEQ GGLLHRVSCS CRKMECTGTP  540
CSHIFYILGI LKHTILPSCC VPTRWTMNAK C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17075DRKRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231784.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5GRD40.0W5GRD4_WHEAT; Uncharacterized protein
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-97FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]